GeT-Biopuces

TBI platform for genomics and transcriptomics.
Sequencing and microarrays.

Technical Expertise

Certified ISO-9001 et NFX50-900

For academic and private research

From samples quality control to data analysis

taff with more than 15 years experience in the field

Innovation

Microbiology referee within the regional GeT platform

Development of diagnostic and custom chips

Project accomodation


Development

Collaboration

Non-disclosure agreements

Skill Transfert (Contact us) and
professional training sessions

About us

Created in 1999 and currently spearheaded by Marie-Ange Teste, the GeT-Biopuces core-facility (quality manual) is one of the first platform of the Génopôle Toulouse Midi Pyrénées (GenoToul).

Labellised IBISA and certifiée ISO 9001 since 2010, the GeT-Biopuces core-facility is dedicated in transcriptomics and genomics and offers service delivery and/or collaboration (R&D).

The Core Facilities and staff offer its expertise and advanced tools for sequencing, microarrays and analysis of bioinformatics and statistical data.

Thanks to the know-how of its multidisciplinary team, you are assisted along your project from its conception to the availability of raw or processed data.

Lots of academic (INRA, CNRS, INSERM, IFREMER...) and private partners have trusted us to collaborate on fundamental or applied research projects in various fields such as microbiology, biotechnology, agri-food industry, health and the environment. Intellectual property issues and non-disclosure agreements can be discussed with the legal department of INSA.

The GeT-Biopuces platform is part of a cutting-edge multi-site core facility in Toulouse, named GeT for ‘Genome and Transcriptome’.

Thus we propose one of the most complete offers in France in the field of genomics and transcriptomics: DNA chips, small and long fragment high throughput sequencing technologies, ddPCR and single- cell

Services and Equipment

Why working with us ?

The platform offers the following services:

For any question, feel free to contact us, our staff will answer you a soon as possible.

Publications

2019

Marsaud N. Séquençage à haut débit - Outils et enjeux pour la santé humaine. Techniques de l’Ingénieur. 2019;:24. https://www.techniques-ingenieur.fr/base-documentaire/biomedical-pharma-th15/nanotechnologies-et-biotechnologies-pour-la-sante-42608210/sequencage-a-haut-debit-bio8205/.

2018

Debaugny RE, Sanchez A, Rech J, Labourdette D, Dorignac J, Geniet F, Palmeri J, Parmeggiani A, Boudsocq F, Anton Leberre V, Walter J, Bouet J. A conserved mechanism drives partition complex assembly on bacterial chromosomes and plasmids. Mol Syst Biol. 2018;14. doi:10.15252/msb.20188516.
Serif M, Dubois G, Finoux A-L, Teste M-A, Jallet D, Daboussi F. One-step generation of multiple gene knock-outs in the diatom Phaeodactylum tricornutum by DNA-free genome editing. Nature Communications. 2018;9:3924. doi:10.1038/s41467-018-06378-9.
Lamarre S, Frasse P, Zouine M, Labourdette D, Sainderichin E, Hu G, Le Berre-Anton V, Bouzayen M, Maza E. Optimization of an RNA-Seq Differential Gene Expression Analysis Depending on Biological Replicate Number and Library Size. Front Plant Sci. 2018;9. doi:10.3389/fpls.2018.00108.
Illikoud N, Klopp C, Roulet A, Bouchez O, Marsaud N, Jaffrès E, Zagorec M. One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070. Standards in Genomic Sciences. 2018;13:22. doi:10.1186/s40793-018-0333-z.
Hoareau-Aveilla C, Quelen C, Congras A, Caillet N, Labourdette D, Dozier C, Brousset P, Lamant L, Meggetto F. MiR-497 suppresses cycle progression through an axis involving CDK6 in ALK-positive cells. Haematologica. 2018;:haematol.2018.195131. doi:10.3324/haematol.2018.195131.
Giraud S, Steichen C, Allain G, Couturier P, Labourdette D, Lamarre S, Ameteau V, Tillet S, Hannaert P, Thuillier R, Hauet T. Dynamic transcriptomic analysis of Ischemic Injury in a Porcine Pre-Clinical Model mimicking Donors Deceased after Circulatory Death. Sci Rep. 2018;8. doi:10.1038/s41598-018-24282-6.

2017

Letaief R, Rebours E, Grohs C, Meersseman C, Fritz S, Trouilh L, Esquerré D, Barbieri J, Klopp C, Philippe R, Blanquet V, Boichard D, Rocha D, Boussaha M. Identification of copy number variation in French dairy and beef breeds using next-generation sequencing. Genetics Selection Evolution. 2017;49:77. doi:10.1186/s12711-017-0352-z.

2016

Naldaiz-Gastesi N, Goicoechea M, Alonso-Martin S, Aiastui A, Lopez-Mayorga M, Garcia-Belda P, Lacalle J, Jose CS, Arauzo-Bravo MJ, Trouilh L, Anton-Leberre V, Herrero D, Matheu A, Bernad A, Garcia-Verdugo JM, Carvajal JJ, Relaix F, Lopez De Munain A, Garcia-Parra P, Izeta A. Identification and characterization of the dermal Panniculus carnosus muscle stem cells. Stem Cell Reports. 2016;7:411–24. doi:10.1016/j.stemcr.2016.08.002.
Chassaing N, Davis EE, McKnight KL, Niederriter AR, Causse A, David V, Desmaison A, LAMARRE S, Vincent-Delorme C, Pasquier L, Coubes C, Lacombe D, Rossi M, Dufier J-L, Dollfus H, Kaplan J, Katsanis N, Etchevers HC, Faguer S, Calvas P. Targeted resequencing identifies PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network. Genome Research. 2016;26:474–85. doi:10.1101/gr.196048.115.
Barasc H, CONGRAS A, Mary N, Trouilh L, MARQUET V, Ferchaud S, Raymond-Letron I, Calgaro A, Loustau A-M, MOUNEY N, ACLOQUE H, Ducos A, Pinton A. Meiotic pairing and gene expression disturbance in germ cells from an infertile boar with a balanced reciprocal autosome-autosome translocation. Chromosome Research. 2016;24:511–27. doi:10.1007/s10577-016-9533-9.
Abot A, Arnal G, Auer L, Lazuka A, Labourdette D, Lamarre S, Trouilh L, Laville E, Lombard V, Potocki-Veronese G, Henrissat B, O’Donohue M, Hernandez-Raquet G, Dumon C, Leberre VA. CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems. BMC Genomics. 2016;17:1–12. doi:10.1186/s12864-016-2988-4.

Instrument Access

For TBI members

Some machines are open for direct reservation.

Discover the range of offered services.

Before use a training is required.

Book online

Within GeT

Access to qPCR Biomark, ddPCR, Illumina sequencers and many other technologies and related skills...

We will answer you at get@genotoul.fr.

Contact

A multidisciplinary team will answer your requests.

  • photo ID
    Marie Ange Teste Platform and Administrative Manager- Biologist
    Biologist
  • photo ID
    Lidwine Trouilh Sequencing and Biochips Services (Agilent - Affymetrix - custom) Quality Manager
    Biologist
  • photo ID
    Nathalie Marsaud Sequencing and Biochips Services (Agilent - Affymetrix - custom)
    Biologist
  • photo ID
    Delphine Labourdette Bioinformatics and statistical data analysis (NGS and microarrays). Design of custom microarrays
    Bioinformatician
  • photo ID
    Matthieu Guionnet Developer - SysAdmin
    Computer Scientist

Plateforme GeT-Biopuces
TBI - INSA - Bat 39
135, avenue de Rangueil
31077 Toulouse Cedex 4 - France

Locate us on a map

localisation on INSA campus